Coverage plots of the taxa found by the pipeline.
IDENTIFIED - Molluscum contagiosum virus subtype 1 (NC_001731.1, TaxID 10280, 1-level-up TaxID 10279, 2-levels-up TaxID 10278, 3-levels-up TaxID 10241) (190.3Kbp)
> 5.60% | : :| Number of reads: 687
> 4.98% | : :|
> 4.36% |: : :| Covered bases: 1.8Kbp
> 3.73% |: : :| Percent covered: 0.957%
> 3.11% |: . : :| Mean coverage: 0.197x
> 2.49% |: : : :| Mean baseQ: 33.3
> 1.87% |: : . : :| Mean mapQ: 38
> 1.24% |: : : : . :|
> 0.62% |:: :. . . :. . .: : . :| Histo bin width: 4.8Kbp
> 0.00% |::.::. :.. ...: ... :::.:.:.:: :. : :| Histo max bin: 6.2224%
1 47.6K 95.1K 142.7K 190.3K
BLAST results:
BK012038.1 - Molluscum contagiosum virus, Identity: 100.0%, Consensus sequence length: 188725 bp, Reference sequence length: 184720 bp, Consensus sequence coverage: 0%IDENTIFIED - Hepatitis B virus (AB206817.2, TaxID 10407, 1-level-up TaxID 10405, 2-levels-up TaxID 10404, 3-levels-up TaxID 2732515) (4.4Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 66681
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 4.4Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 100%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 1.8e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 36.5
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 19.4
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 110bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 1.1K 2.2K 3.3K 4.4K
BLAST results:
AB206817.2 - Hepatitis B virus, Identity: 95.266%, Consensus sequence length: 4392 bp, Reference sequence length: 4412 bp, Consensus sequence coverage: 99%FILTERED OUT - Human mastadenovirus B (OY757703.1, TaxID 108098, 1-level-up TaxID 10509, 2-levels-up TaxID 10508, 3-levels-up TaxID 2732559) (36.0Kbp)
> 29.77% | : | Number of reads: 2004
> 26.46% |. . . : |
> 23.15% |: : : : | Covered bases: 3.3Kbp
> 19.84% |:. : : . : | Percent covered: 9.221%
> 16.54% |:: : : : . :: | Mean coverage: 6.39x
> 13.23% |:: : : . :: : :: :: :.| Mean baseQ: 34.7
> 9.92% |:: :: : : : .:: :: :: :: ::| Mean mapQ: 37.9
> 6.61% |:: :: : :.: ::: :: :: :: ::|
> 3.31% |:: :: : ::: :::::: :: :: ::| Histo bin width: 898bp
> 0.00% |:: . :: .:: ::: :::::: . :: :: ::| Histo max bin: 33.073%
1 9.0K 18.0K 26.9K 36.0K
BLAST results:
KM190941.1 - Human mastadenovirus C, Identity: 99.0%, Consensus sequence length: 34958 bp, Reference sequence length: 34585 bp, Consensus sequence coverage: 6%FILTERED OUT - Reovirus sp. (L19767.1, TaxID 10891, 1-level-up TaxID 2788865, 2-levels-up TaxID 2732541, 3-levels-up TaxID 2732459) (1.3Kbp)
> 90.00% | :::::. | Number of reads: 26
> 80.00% | :::::: |
> 70.00% | :::::: | Covered bases: 192bp
> 60.00% | :::::: | Percent covered: 15.27%
> 50.00% | :::::: | Mean coverage: 3.02x
> 40.00% | :::::: | Mean baseQ: 33.5
> 30.00% | :::::: | Mean mapQ: 60
> 20.00% | .:::::: |
> 10.00% | ::::::: | Histo bin width: 31bp
> 0.00% | ::::::: | Histo max bin: 100%
1 310 620 930 1.3K
BLAST results:
M17598.1 - Mammalian orthoreovirus 1, Identity: 99.479%, Consensus sequence length: 192 bp, Reference sequence length: 1331 bp, Consensus sequence coverage: 100%IDENTIFIED - Semliki Forest virus (MH880789.1, TaxID 11033, 1-level-up TaxID 11019, 2-levels-up TaxID 11018, 3-levels-up TaxID 2732544) (11.8Kbp)
> 90.00% |::::: ::::::::::::::.::: ::: ::.::: | Number of reads: 25619
> 80.00% |:::::.::::::::::::::::::. :::.::::::. : |
> 70.00% |::::::::::::::::::::::::: ::::::::::: : | Covered bases: 10.9Kbp
> 60.00% |:::::::::::::::::::::::::.::::::::::: : | Percent covered: 92.28%
> 50.00% |::::::::::::::::::::::::::::::::::::: : | Mean coverage: 266x
> 40.00% |::::::::::::::::::::::::::::::::::::: : | Mean baseQ: 34
> 30.00% |::::::::::::::::::::::::::::::::::::: : | Mean mapQ: 38.9
> 20.00% |::::::::::::::::::::::::::::::::::::: : |
> 10.00% |::::::::::::::::::::::::::::::::::::::: | Histo bin width: 295bp
> 0.00% |::::::::::::::::::::::::::::::::::::::: | Histo max bin: 100%
1 3.0K 5.9K 8.8K 11.8K
BLAST results:
MH880789.1 - Semliki Forest virus, Identity: 98.633%, Consensus sequence length: 11395 bp, Reference sequence length: 11820 bp, Consensus sequence coverage: 95%IDENTIFIED - Vesicular stomatitis virus (MW306665.1, TaxID 11276, 1-level-up TaxID 327822, 2-levels-up TaxID 11271, 3-levels-up TaxID 2842407) (11.2Kbp)
> 90.00% | : :: | Number of reads: 1612
> 80.00% | . : :: :: |
> 70.00% | :. . : ::.:: : | Covered bases: 3.9Kbp
> 60.00% | ::: : : ::::: : | Percent covered: 35.08%
> 50.00% | ::: : : : :::::: : | Mean coverage: 17x
> 40.00% | ::: : : : ::::::: :.| Mean baseQ: 33.1
> 30.00% | :::: : : : .: ::::::::::| Mean mapQ: 59.7
> 20.00% | :::: :: :: : :: .::::::::::|
> 10.00% | :::: :: :: :.:: :::::::::::| Histo bin width: 279bp
> 0.00% | :::: :: :: :::: :::::::::::| Histo max bin: 100%
1 2.8K 5.6K 8.4K 11.2K
BLAST results:
MW306665.1 - Vesicular stomatitis virus, Identity: 99.782%, Consensus sequence length: 10735 bp, Reference sequence length: 11176 bp, Consensus sequence coverage: 37%FILTERED OUT - Simian endogenous retrovirus (U85505.1, TaxID 1048243, 1-level-up TaxID 11855, 2-levels-up TaxID 140052, 3-levels-up TaxID 327045) (8.4Kbp)
> 90.00% | :::::::::: :: ::::::::::::::::::: | Number of reads: 7296
> 80.00% | :::::::::: :: ::::::::::::::::::: |
> 70.00% | :::::::::: .::.::::::::::::::::::: | Covered bases: 7.3Kbp
> 60.00% | :::::::::: :::::::::::::::::::::::: | Percent covered: 87.31%
> 50.00% | :::::::::::::::::::::::::::::::::::: | Mean coverage: 108x
> 40.00% | :::::::::::::::::::::::::::::::::::: | Mean baseQ: 33.1
> 30.00% | :::::::::::::::::::::::::::::::::::: | Mean mapQ: 59.5
> 20.00% | ::::::::::::::::::::::::::::::::::::..|
> 10.00% | :::::::::::::::::::::::::::::::::::::::| Histo bin width: 209bp
> 0.00% | :::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 2.1K 4.2K 6.3K 8.4K
BLAST results:
LC310756.1 - Chlorocebus sabaeus, Identity: 98.636%, Consensus sequence length: 7802 bp, Reference sequence length: 8540 bp, Consensus sequence coverage: 91%IDENTIFIED - Squirrel monkey retrovirus (MK561030.1, TaxID 11856, 1-level-up TaxID 140052, 2-levels-up TaxID 327045, 3-levels-up TaxID 11632) (8.8Kbp)
> 64.11% | : | Number of reads: 400
> 56.99% | :: |
> 49.86% | :: | Covered bases: 518bp
> 42.74% | :: | Percent covered: 5.895%
> 35.62% | :: | Mean coverage: 5.74x
> 28.49% | :: : : | Mean baseQ: 32.9
> 21.37% | :: : : | Mean mapQ: 59.2
> 14.25% | ::. : : |
> 7.12% | ::: : :: | Histo bin width: 219bp
> 0.00% | ::: : :: | Histo max bin: 71.233%
1 2.2K 4.4K 6.6K 8.8K
BLAST results:
MK561030.1 - Squirrel monkey retrovirus, Identity: 98.889%, Consensus sequence length: 5472 bp, Reference sequence length: 8787 bp, Consensus sequence coverage: 9%IDENTIFIED - enterovirus E4 (KU172420.1, TaxID 2768764, 1-level-up TaxID 12064, 2-levels-up TaxID 12059, 3-levels-up TaxID 2946630) (7.5Kbp)
> 90.00% |:.: | Number of reads: 1280275
> 80.00% |::: |
> 70.00% |::: | Covered bases: 859bp
> 60.00% |:::: | Percent covered: 11.53%
> 50.00% |:::: | Mean coverage: 1.59e+04x
> 40.00% |:::: | Mean baseQ: 39
> 30.00% |:::: . | Mean mapQ: 0.00502
> 20.00% |:::: : |
> 10.00% |:::: : : .| Histo bin width: 186bp
> 0.00% |:::: :: : : :| Histo max bin: 100%
1 1.9K 3.7K 5.6K 7.5K
BLAST results:
KU172420.1 - enterovirus E4, Identity: 95.222%, Consensus sequence length: 7432 bp, Reference sequence length: 7451 bp, Consensus sequence coverage: 6%IDENTIFIED - Hepatovirus A (KX035096.1, TaxID 12092, 1-level-up TaxID 12091, 2-levels-up TaxID 2946633, 3-levels-up TaxID 12058) (7.5Kbp)
> 90.00% | : : | Number of reads: 412
> 80.00% | . : . : . |
> 70.00% | : : : : : : | Covered bases: 2.2Kbp
> 60.00% | .: : : :: : ::: | Percent covered: 29.66%
> 50.00% | :: : : :: : : ::: | Mean coverage: 7.13x
> 40.00% | :: : :: :: :: : :::: | Mean baseQ: 33.1
> 30.00% | :: : :: :: :: : :::: | Mean mapQ: 59.1
> 20.00% | :: :.:: ::. ::. : :::: |
> 10.00% | .:: :::: :::.:::::.:::: | Histo bin width: 188bp
> 0.00% | :::.:::: :::::::::::::: : :| Histo max bin: 100%
1 1.9K 3.8K 5.6K 7.5K
BLAST results:
KX035096.1 - Hepatovirus A, Identity: 99.394%, Consensus sequence length: 7037 bp, Reference sequence length: 7521 bp, Consensus sequence coverage: 31%FILTERED OUT - Duck hepatitis B virus (S65868.1, TaxID 12639, 1-level-up TaxID 10437, 2-levels-up TaxID 10404, 3-levels-up TaxID 2732515) (3.2Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 53865
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 3.2Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 100%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 2.02e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 35.5
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 39.6
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 80bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 800 1.6K 2.4K 3.2K
BLAST results:
AY233280.1 - Hepatitis B virus, Identity: 95.123%, Consensus sequence length: 3221 bp, Reference sequence length: 3221 bp, Consensus sequence coverage: 99%IDENTIFIED - Human adenovirus 1 (AB583503.1, TaxID 10533, 1-level-up TaxID 129951, 2-levels-up TaxID 10509, 3-levels-up TaxID 10508) (3.2Kbp)
> 90.00% | :: ::. : | Number of reads: 311
> 80.00% | :: ::: : |
> 70.00% | :: ::: : | Covered bases: 553bp
> 60.00% | :: ::: : | Percent covered: 17.44%
> 50.00% | :: ::: : | Mean coverage: 11.2x
> 40.00% | :: ::: : | Mean baseQ: 37.8
> 30.00% | ::. ::: : | Mean mapQ: 15.4
> 20.00% | ::: ::: :: |
> 10.00% | .::: ::: ::: | Histo bin width: 79bp
> 0.00% | :::: :::: ::: | Histo max bin: 100%
1 790 1.6K 2.4K 3.2K
BLAST results:
OR753103.1 - Human adenovirus 6, Identity: 99.588%, Consensus sequence length: 1139 bp, Reference sequence length: 35901 bp, Consensus sequence coverage: 43%IDENTIFIED - Enterovirus F (NC_021220.1, TaxID 1330520, 1-level-up TaxID 12059, 2-levels-up TaxID 2946630, 3-levels-up TaxID 12058) (7.4Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 116452577
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 7.4Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 100%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 8.56e+05x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59.2
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 184bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 1.8K 3.7K 5.5K 7.4K
BLAST results:
NC_021220.1 - Enterovirus F, Identity: 99.676%, Consensus sequence length: 7398 bp, Reference sequence length: 7397 bp, Consensus sequence coverage: 100%FILTERED OUT - SEN virus (KM593802.2, TaxID 136966, 1-level-up TaxID 363628, 2-levels-up TaxID 687329, 3-levels-up TaxID 10239) (3.8Kbp)
> 90.00% | : : | Number of reads: 250
> 80.00% |. : : |
> 70.00% |:: :. : | Covered bases: 542bp
> 60.00% |:: :: : | Percent covered: 14.11%
> 50.00% |:: :: : | Mean coverage: 6.65x
> 40.00% |:: ::: : | Mean baseQ: 35.6
> 30.00% |:: ::: :: | Mean mapQ: 15.4
> 20.00% |:: ::: :: |
> 10.00% |::: ::: ::: | Histo bin width: 96bp
> 0.00% |::: ::: ::: | Histo max bin: 100%
1 960 1.9K 2.9K 3.8K
BLAST results:
MN766200.1 - Torque teno virus, Identity: 99.539%, Consensus sequence length: 582 bp, Reference sequence length: 2992 bp, Consensus sequence coverage: 37%IDENTIFIED - Enterovirus C (MT957194.1, TaxID 138950, 1-level-up TaxID 12059, 2-levels-up TaxID 2946630, 3-levels-up TaxID 12058) (7.7Kbp)
> 90.00% | :::: : :: .: :: : ::: :::: | Number of reads: 7588
> 80.00% | :::: :::: :: :: : ::: :::: |
> 70.00% | :::: ::::. :: :: : ::: ::::: | Covered bases: 5.4Kbp
> 60.00% | :::::::::: ::::: . : ::: ::::: : | Percent covered: 70.12%
> 50.00% | :::::::::: :::::: : : ::: :::::. :.| Mean coverage: 121x
> 40.00% | ::::::::::::::::: : : :::.::::::.::| Mean baseQ: 33.4
> 30.00% | ::::::::::::::::: : :::::::::::::::| Mean mapQ: 58.4
> 20.00% | .::::::::::::::::: : :::::::::::::::|
> 10.00% | .:::::::::::::::::: : :::::::::::::::| Histo bin width: 192bp
> 0.00% | ::::::::::::::::::: : :::::::::::::::| Histo max bin: 100%
1 1.9K 3.8K 5.8K 7.7K
BLAST results:
OR208593.1 - Poliovirus 1, Identity: 97.256%, Consensus sequence length: 6773 bp, Reference sequence length: 6826 bp, Consensus sequence coverage: 60%IDENTIFIED - Encephalomyocarditis virus (MT250508.1, TaxID 12104, 1-level-up TaxID 1821749, 2-levels-up TaxID 12103, 3-levels-up TaxID 2946627) (7.9Kbp)
> 90.00% | : | Number of reads: 794
> 80.00% | : . |
> 70.00% | . : : | Covered bases: 1.1Kbp
> 60.00% | : :: : | Percent covered: 14.17%
> 50.00% | : .:: :. | Mean coverage: 7.03x
> 40.00% | : : ::: :: | Mean baseQ: 37.1
> 30.00% | : : ::: :: | Mean mapQ: 26.7
> 20.00% |.: .: ::: :: |
> 10.00% |:: :: ::: :: | Histo bin width: 196bp
> 0.00% |:: :: ::: : :: | Histo max bin: 100%
1 2.0K 3.9K 5.9K 7.9K
BLAST results:
KM269482.1 - Encephalomyocarditis virus, Identity: 99.746%, Consensus sequence length: 7728 bp, Reference sequence length: 7875 bp, Consensus sequence coverage: 12%IDENTIFIED - Gemycircularvirus HV-GcV1 (NC_030447.1, TaxID 1862824, 1-level-up TaxID 1910929, 2-levels-up TaxID 1542744, 3-levels-up TaxID 1910928) (2.3Kbp)
> 90.00% |: :: :: :: :| Number of reads: 406
> 80.00% |: :: :: :: :|
> 70.00% |: ::: :: :: :| Covered bases: 605bp
> 60.00% |: ::: :: :: :| Percent covered: 26.72%
> 50.00% |: ::: :: ::::| Mean coverage: 19.5x
> 40.00% |: ::: :: ::::| Mean baseQ: 33.1
> 30.00% |: ::: :: ::::| Mean mapQ: 59.5
> 20.00% |: :::. ::: ::::|
> 10.00% |:: :::: ::: .::::| Histo bin width: 56bp
> 0.00% |:: :::: :::: :::::| Histo max bin: 100%
1 560 1.1K 1.7K 2.3K
BLAST results:
NC_030447.1 - Gemycircularvirus HV-GcV1, Identity: 90.625%, Consensus sequence length: 2264 bp, Reference sequence length: 2264 bp, Consensus sequence coverage: 28%IDENTIFIED - Betapolyomavirus macacae (AF332699.1, TaxID 1891767, 1-level-up TaxID 1891714, 2-levels-up TaxID 151341, 3-levels-up TaxID 2732532) (5.3Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 658353
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 5.3Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.96%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 1.52e+04x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 131bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 1.3K 2.6K 3.9K 5.3K
BLAST results:
AF332699.1 - Betapolyomavirus macacae, Identity: 98.863%, Consensus sequence length: 5254 bp, Reference sequence length: 5270 bp, Consensus sequence coverage: 100%FILTERED OUT - Human adenovirus sp. (MW686820.1, TaxID 1907210, 1-level-up TaxID 107677, 2-levels-up TaxID 10509, 3-levels-up TaxID 10508) (34.2Kbp)
> 29.58% | : | Number of reads: 1196
> 26.29% | : . |
> 23.01% |. : : | Covered bases: 2.0Kbp
> 19.72% |: . : : | Percent covered: 5.928%
> 16.43% |: : . : : : .. | Mean coverage: 4.04x
> 13.15% |: : : : : : : :: | Mean baseQ: 34.5
> 9.86% |: : : : : : : : :: | Mean mapQ: 19.8
> 6.57% |: :.: : ::: : : :: |
> 3.29% |: ::: : ::: : : :: | Histo bin width: 855bp
> 0.00% |: .::: . : ::: .: : .. :: | Histo max bin: 32.865%
1 8.6K 17.1K 25.6K 34.2K
BLAST results:
MH121108.1 - Human mastadenovirus C, Identity: 100.0%, Consensus sequence length: 27037 bp, Reference sequence length: 36077 bp, Consensus sequence coverage: 5%IDENTIFIED - Baboon endogenous virus strain M7 (NC_022517.1, TaxID 11764, 1-level-up TaxID 196403, 2-levels-up TaxID 353769, 3-levels-up TaxID 153135) (8.5Kbp)
> 90.00% | :: :::::::: . :. | Number of reads: 4399
> 80.00% | : :: :::::::: : :: |
> 70.00% | : :: ::::::::: : :: | Covered bases: 4.0Kbp
> 60.00% | : :: ::::::::: : .:: | Percent covered: 46.53%
> 50.00% | : :: :::::::::.: ::: | Mean coverage: 63.8x
> 40.00% | : :: ::::::::::: .::: : | Mean baseQ: 33.2
> 30.00% | . : :: :::::::::::: :::: : : | Mean mapQ: 57.8
> 20.00% | : : ::: :::::::::::: :::: : : |
> 10.00% | :.: :::.::::::::::::. :::: : : | Histo bin width: 212bp
> 0.00% | ::: ::::::::::::::::: ::::. : : | Histo max bin: 100%
1 2.1K 4.2K 6.4K 8.5K
BLAST results:
NC_022517.1 - Baboon endogenous virus strain M7, Identity: 92.743%, Consensus sequence length: 5373 bp, Reference sequence length: 8507 bp, Consensus sequence coverage: 68%IDENTIFIED - Anelloviridae sp. (MZ824831.1, TaxID 2055263, 1-level-up TaxID 363628, 2-levels-up TaxID 687329, 3-levels-up TaxID 10239) (2.7Kbp)
> 90.00% | :: :: | Number of reads: 696
> 80.00% | ::. :: |
> 70.00% | ::: :: | Covered bases: 369bp
> 60.00% | ::: :: | Percent covered: 13.85%
> 50.00% | ::: :: | Mean coverage: 35.5x
> 40.00% | ::: :: | Mean baseQ: 36.2
> 30.00% | :::: :: | Mean mapQ: 32.2
> 20.00% | :::: ::: |
> 10.00% | :::: ::: | Histo bin width: 66bp
> 0.00% | :::: :::. | Histo max bin: 100%
1 660 1.3K 2.0K 2.7K
BLAST results:
MZ285985.1 - Anelloviridae sp., Identity: 99.355%, Consensus sequence length: 2271 bp, Reference sequence length: 2867 bp, Consensus sequence coverage: 9%FILTERED OUT - Capybara genomovirus 7 (MK483079.1, TaxID 2582946, 1-level-up TaxID 1941235, 2-levels-up TaxID 1910928, 3-levels-up TaxID 2732539) (2.2Kbp)
> 90.00% | . :: : | Number of reads: 218
> 80.00% | : :: : |
> 70.00% | : :: . : | Covered bases: 463bp
> 60.00% |. : .::: :: .: | Percent covered: 20.61%
> 50.00% |: : :::: :: :: | Mean coverage: 8.3x
> 40.00% |: : :::: :: :: | Mean baseQ: 33.6
> 30.00% |: : :::: :: :: | Mean mapQ: 57
> 20.00% |: : :::: :: ::: |
> 10.00% |: : :::: :: ::: | Histo bin width: 56bp
> 0.00% |: : :::: :: ::: | Histo max bin: 100%
1 560 1.1K 1.7K 2.2K
BLAST results:
MT309813.1 - Genomoviridae sp., Identity: 96.774%, Consensus sequence length: 1387 bp, Reference sequence length: 2250 bp, Consensus sequence coverage: 23%FILTERED OUT - Hepeviridae sp. (OR487154.1, TaxID 2715178, 1-level-up TaxID 1009842, 2-levels-up TaxID 3079366, 3-levels-up TaxID 2732543) (7.2Kbp)
> 90.00% | : :: | Number of reads: 237
> 80.00% | : :: |
> 70.00% | : : :: | Covered bases: 1.1Kbp
> 60.00% | : : :: | Percent covered: 15.28%
> 50.00% | : :. :: | Mean coverage: 3.92x
> 40.00% | : :: .:: | Mean baseQ: 45
> 30.00% | :: :: :::: | Mean mapQ: 3.33
> 20.00% | :: ::.:::: |
> 10.00% | .:: ::::::: | Histo bin width: 180bp
> 0.00% | ::: :::::::: | Histo max bin: 100%
1 1.8K 3.6K 5.4K 7.2K
BLAST results:
MW355402.1 - Hepatitis E virus, Identity: 100.0%, Consensus sequence length: 2079 bp, Reference sequence length: 7167 bp, Consensus sequence coverage: 32%FILTERED OUT - Anelloviridae sp. ctHLs5 (BK032508.1, TaxID 2828017, 1-level-up TaxID 363628, 2-levels-up TaxID 687329, 3-levels-up TaxID 10239) (3.8Kbp)
> 90.00% | : : : :: | Number of reads: 221
> 80.00% | : : : :: |
> 70.00% | : : :: :: | Covered bases: 736bp
> 60.00% | : : :: :: | Percent covered: 19.51%
> 50.00% | : : :: :: | Mean coverage: 7.25x
> 40.00% | ::: :: :: | Mean baseQ: 33.2
> 30.00% | .::: :: :: | Mean mapQ: 53.2
> 20.00% | ::::: ::: :: |
> 10.00% | ::::: ::: : .::: | Histo bin width: 94bp
> 0.00% | ::::: ::: : :::: | Histo max bin: 100%
1 940 1.9K 2.8K 3.8K
BLAST results:
MW455438.1 - Anelloviridae sp., Identity: 95.556%, Consensus sequence length: 2876 bp, Reference sequence length: 3717 bp, Consensus sequence coverage: 8%FILTERED OUT - Porcine genomovirus-1 (MW601956.1, TaxID 2853789, 1-level-up TaxID 1941235, 2-levels-up TaxID 1910928, 3-levels-up TaxID 2732539) (2.2Kbp)
> 90.00% |:::: | Number of reads: 134
> 80.00% |:::: |
> 70.00% |:::: | Covered bases: 225bp
> 60.00% |:::: | Percent covered: 10.19%
> 50.00% |:::: | Mean coverage: 8.26x
> 40.00% |:::: | Mean baseQ: 33.2
> 30.00% |:::: | Mean mapQ: 60
> 20.00% |:::: |
> 10.00% |:::: | Histo bin width: 55bp
> 0.00% |::::: | Histo max bin: 100%
1 550 1.1K 1.6K 2.2K
BLAST results:
OQ792011.1 - Genomoviridae sp., Identity: 98.667%, Consensus sequence length: 225 bp, Reference sequence length: 2088 bp, Consensus sequence coverage: 100%IDENTIFIED - Hepatitis E virus (KC618402.1, TaxID 291484, 1-level-up TaxID 1009842, 2-levels-up TaxID 3079366, 3-levels-up TaxID 2732543) (7.4Kbp)
> 90.00% | :: | Number of reads: 275
> 80.00% | . :: |
> 70.00% | : :: | Covered bases: 1.2Kbp
> 60.00% | :. : :: | Percent covered: 16.72%
> 50.00% | :: :. :: | Mean coverage: 4.18x
> 40.00% | :: :: :: | Mean baseQ: 37.5
> 30.00% | : :: ::.:::: | Mean mapQ: 14.8
> 20.00% | : :: ::::::: |
> 10.00% | :. :: ::::::: | Histo bin width: 185bp
> 0.00% | :: :: :: ::::::: | Histo max bin: 100%
1 1.9K 3.7K 5.5K 7.4K
BLAST results:
MW355402.1 - Hepatitis E virus, Identity: 98.047%, Consensus sequence length: 6942 bp, Reference sequence length: 7167 bp, Consensus sequence coverage: 11%IDENTIFIED - Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) (NC_007363.1, TaxID 93838, 1-level-up TaxID 102793, 2-levels-up TaxID 11320, 3-levels-up TaxID 2955291) (1.0Kbp)
> 90.00% | :::::::::::::::::::::::::::::::::::::::| Number of reads: 14481
> 80.00% | :::::::::::::::::::::::::::::::::::::::|
> 70.00% | :::::::::::::::::::::::::::::::::::::::| Covered bases: 1.0Kbp
> 60.00% | :::::::::::::::::::::::::::::::::::::::| Percent covered: 97.37%
> 50.00% | :::::::::::::::::::::::::::::::::::::::| Mean coverage: 1.8e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.2
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59.3
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 25bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 250 500 750 1.0K
BLAST results:
CY015082.1 - Influenza A virus (A/chicken/Scotland/1959(H5N1)), Identity: 99.8%, Consensus sequence length: 1000 bp, Reference sequence length: 1027 bp, Consensus sequence coverage: 99%FILTERED OUT - Influenza B virus (ON845596.1, TaxID 11520, 1-level-up TaxID 2955465, 2-levels-up TaxID 197912, 3-levels-up TaxID 11308) (1.4Kbp)
> 90.00% | ::::::::::::::::::::::::::::| Number of reads: 3482
> 80.00% | ::::::::::::::::::::::::::::|
> 70.00% | . ::::::::::::::::::::::::::::| Covered bases: 1.0Kbp
> 60.00% | : ::::::::::::::::::::::::::::| Percent covered: 72.77%
> 50.00% | : ::::::::::::::::::::::::::::| Mean coverage: 271x
> 40.00% | : ::::::::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% | : ::::::::::::::::::::::::::::| Mean mapQ: 56.4
> 20.00% | : ::::::::::::::::::::::::::::|
> 10.00% | .:.::::::::::::::::::::::::::::| Histo bin width: 35bp
> 0.00% | :::::::::::::::::::::::::::::::| Histo max bin: 100%
1 350 700 1.1K 1.4K
BLAST results:
CY015083.1 - Influenza A virus (A/chicken/Scotland/1959(H5N1)), Identity: 97.679%, Consensus sequence length: 1063 bp, Reference sequence length: 1458 bp, Consensus sequence coverage: 93%IDENTIFIED - Zingilamo virus (OL965122.1, TaxID 2983543, 1-level-up TaxID 2788734, 2-levels-up TaxID 11018, 3-levels-up TaxID 2732544) (11.7Kbp)
> 90.00% |:: : ::::::::::: .: ::. ::: ::... | Number of reads: 9186
> 80.00% |::.: ::::::::::: :: ::: .::: ::::: |
> 70.00% |::::.:::::::::::::: ::: :::::::::: | Covered bases: 10.0Kbp
> 60.00% |::::::::::::::::::: :::.:::::::::: . | Percent covered: 85.96%
> 50.00% |:::::::::::::::::::. :::::::::::::: : . | Mean coverage: 82.6x
> 40.00% |:::::::::::::::::::::::::::::::::::.: : | Mean baseQ: 47.7
> 30.00% |:::::::::::::::::::::::::::::::::::::.: | Mean mapQ: 0.198
> 20.00% |::::::::::::::::::::::::::::::::::::::: |
> 10.00% |::::::::::::::::::::::::::::::::::::::: | Histo bin width: 292bp
> 0.00% |::::::::::::::::::::::::::::::::::::::: | Histo max bin: 100%
1 2.9K 5.8K 8.8K 11.7K
BLAST results:
OL965122.1 - Zingilamo virus, Identity: 94.845%, Consensus sequence length: 10953 bp, Reference sequence length: 11687 bp, Consensus sequence coverage: 21%FILTERED OUT - ticpantry virus 3 (ON706349.1, TaxID 2993527, 1-level-up TaxID 2585030, 2-levels-up TaxID 2559587, 3-levels-up TaxID 10239) (3.2Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 31562
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 3.2Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 100%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 1.16e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 38.1
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 28.3
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 79bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 790 1.6K 2.4K 3.2K
BLAST results:
JF754587.1 - Hepatitis B virus, Identity: 94.727%, Consensus sequence length: 3180 bp, Reference sequence length: 3183 bp, Consensus sequence coverage: 94%IDENTIFIED - Porcine circovirus 1 (NC_001792.2, TaxID 133704, 1-level-up TaxID 3048278, 2-levels-up TaxID 39725, 3-levels-up TaxID 39724) (1.8Kbp)
> 90.00% | ::: :: :: :::: | Number of reads: 418
> 80.00% | ::: ::: :: :::: |
> 70.00% | ::: ::: :: :::: | Covered bases: 620bp
> 60.00% | ::: ::: :: ::::: | Percent covered: 35.27%
> 50.00% | ::: :::. :: ::::: | Mean coverage: 18.9x
> 40.00% | ::: :::: :: ::::: | Mean baseQ: 46.7
> 30.00% | :::: :::: .:: :::::: | Mean mapQ: 7.03
> 20.00% | :::: :::: ::: :::::: |
> 10.00% | :::: :::: :::. :::::: | Histo bin width: 43bp
> 0.00% | :::: :::: :::: :::::: | Histo max bin: 100%
1 430 860 1.3K 1.8K
BLAST results:
NC_001792.2 - Porcine circovirus 1, Identity: 99.087%, Consensus sequence length: 973 bp, Reference sequence length: 1758 bp, Consensus sequence coverage: 37%FILTERED OUT - Torque teno virus 19 (NC_014078.1, TaxID 687358, 1-level-up TaxID 3048420, 2-levels-up TaxID 687331, 3-levels-up TaxID 687329) (3.8Kbp)
> 90.00% | : : :: : .:: | Number of reads: 112
> 80.00% | : : :: : ::: |
> 70.00% | : : :: : ::: | Covered bases: 1.1Kbp
> 60.00% | : : :: : ::: : | Percent covered: 28.39%
> 50.00% | ::: :: :. ::: .: | Mean coverage: 3.58x
> 40.00% | :::. :: :: ::: :: | Mean baseQ: 39.8
> 30.00% | :::: :: :: ::: :: | Mean mapQ: 9.57
> 20.00% | :::: .:: :: ::: :: |
> 10.00% |.:::: ::: :: :::. :: | Histo bin width: 95bp
> 0.00% |::::: ::: :: :::: :: | Histo max bin: 100%
1 950 1.9K 2.9K 3.8K
BLAST results:
MN766595.1 - Torque teno virus, Identity: 98.104%, Consensus sequence length: 868 bp, Reference sequence length: 3581 bp, Consensus sequence coverage: 41%IDENTIFIED - Torque teno virus 29 (OQ064602.1, TaxID 687368, 1-level-up TaxID 3048427, 2-levels-up TaxID 687331, 3-levels-up TaxID 687329) (3.1Kbp)
> 90.00% | :: : | Number of reads: 32
> 80.00% | :: : |
> 70.00% | :: : | Covered bases: 399bp
> 60.00% | ::: : | Percent covered: 13.01%
> 50.00% | :::: : | Mean coverage: 1.56x
> 40.00% | ::::::. | Mean baseQ: 33.2
> 30.00% | ::::::: | Mean mapQ: 60
> 20.00% | ::::::: |
> 10.00% | ::::::: | Histo bin width: 76bp
> 0.00% | ::::::: | Histo max bin: 100%
1 760 1.5K 2.3K 3.1K
BLAST results:
OQ064602.1 - Torque teno virus 29, Identity: 99.598%, Consensus sequence length: 460 bp, Reference sequence length: 3068 bp, Consensus sequence coverage: 87%IDENTIFIED - Usutu virus (NC_006551.1, TaxID 64286, 1-level-up TaxID 3048443, 2-levels-up TaxID 3044782, 3-levels-up TaxID 11050) (11.1Kbp)
> 90.00% |.:::::::::::::::::::::::::::::::::::::: | Number of reads: 320162
> 80.00% |:::::::::::::::::::::::::::::::::::::::.|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 11.0Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.23%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 3.62e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.2
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59.4
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 276bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 2.8K 5.5K 8.3K 11.1K
BLAST results:
NC_006551.1 - Usutu virus, Identity: 99.281%, Consensus sequence length: 10983 bp, Reference sequence length: 11066 bp, Consensus sequence coverage: 100%IDENTIFIED - West Nile virus (OK573275.1, TaxID 11082, 1-level-up TaxID 3048448, 2-levels-up TaxID 3044782, 3-levels-up TaxID 11050) (14.3Kbp)
> 90.00% |:::::::::::::::::::::::::::::: :::::::::| Number of reads: 87345
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 14.3Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.78%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 711x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 34.5
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 34.6
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 357bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 3.6K 7.1K 10.7K 14.3K
BLAST results:
OK573275.1 - West Nile virus, Identity: 98.556%, Consensus sequence length: 14315 bp, Reference sequence length: 14310 bp, Consensus sequence coverage: 99%IDENTIFIED - Zika virus (KY766069.1, TaxID 64320, 1-level-up TaxID 3048459, 2-levels-up TaxID 3044782, 3-levels-up TaxID 11050) (11.2Kbp)
> 90.00% | : | Number of reads: 5141
> 80.00% | . : |
> 70.00% | :: : . | Covered bases: 3.1Kbp
> 60.00% | . :: : . : | Percent covered: 27.77%
> 50.00% | . : :: : : . : | Mean coverage: 52.4x
> 40.00% | : :: .::: .: . :: .: : | Mean baseQ: 33.2
> 30.00% | : ::: :::: :: : :: :: :: | Mean mapQ: 58.4
> 20.00% | : ::: :::: :: : .:: :: ::: |
> 10.00% | : :::::::: :::: ::: :: ::: :| Histo bin width: 278bp
> 0.00% | : :::::::: ::::: ::: :: ::: :| Histo max bin: 100%
1 2.8K 5.6K 8.3K 11.2K
BLAST results:
KY766069.1 - Zika virus, Identity: 93.81%, Consensus sequence length: 10106 bp, Reference sequence length: 11155 bp, Consensus sequence coverage: 30%IDENTIFIED - Human alphaherpesvirus 1 (OQ724913.1, TaxID 10298, 1-level-up TaxID 3050292, 2-levels-up TaxID 10294, 3-levels-up TaxID 10293) (173.4Kbp)
> 87.84% | .: : . ::: | Number of reads: 271176
> 78.08% | :..:: : . : : ::: |
> 68.32% | ::::: :::: : .: ::: ::: ::: | Covered bases: 126.0Kbp
> 58.56% |. :::::.:::::. :.::.::::::: : ::.::::.. | Percent covered: 72.64%
> 48.80% |: ::::::::::::.:::::::::::: : ::::::::: | Mean coverage: 182x
> 39.04% |:::::::::::::::::::::::::::.: ::::::::: | Mean baseQ: 34.5
> 29.28% |::::::::::::::::::::::::::::: ::::::::: | Mean mapQ: 42.8
> 19.52% |::::::::::::::::::::::::::::: :::::::::.|
> 9.76% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 4.3Kbp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 97.601%
1 43.4K 86.7K 130.1K 173.4K
BLAST results:
MG999854.1 - Human alphaherpesvirus 1, Identity: 99.774%, Consensus sequence length: 173126 bp, Reference sequence length: 151378 bp, Consensus sequence coverage: 69%IDENTIFIED - Human herpesvirus 4 type 2 (NC_009334.1, TaxID 12509, 1-level-up TaxID 10376, 2-levels-up TaxID 3050299, 3-levels-up TaxID 10375) (172.8Kbp)
> 21.55% | : | Number of reads: 1564
> 19.15% | : |
> 16.76% | : : | Covered bases: 5.0Kbp
> 14.36% | :: : | Percent covered: 2.907%
> 11.97% | .:: : | Mean coverage: 0.797x
> 9.58% | ::::: . | Mean baseQ: 34
> 7.18% | ::::: : | Mean mapQ: 48.2
> 4.79% | :::::: : |
> 2.39% | :::::: .: | Histo bin width: 4.3Kbp
> 0.00% | :::::: . : :: . . . | Histo max bin: 23.941%
1 43.2K 86.4K 129.6K 172.8K
BLAST results:
MH590554.1 - human gammaherpesvirus 4, Identity: 100.0%, Consensus sequence length: 152281 bp, Reference sequence length: 170080 bp, Consensus sequence coverage: 2%IDENTIFIED - Suid alphaherpesvirus 1 (NC_075689.1, TaxID 10345, 1-level-up TaxID 3050355, 2-levels-up TaxID 10319, 3-levels-up TaxID 10293) (140.4Kbp)
> 75.30% | : | Number of reads: 85663
> 66.94% | . : |
> 58.57% | : : | Covered bases: 55.0Kbp
> 50.20% | :: : : : : . : .| Percent covered: 39.18%
> 41.84% | . :: : :. : : :.: ::: ::| Mean coverage: 67.2x
> 33.47% | : ::: :: . ::: : ::::::: ::: .::| Mean baseQ: 33.7
> 25.10% |. : ::: :::::::::: ::::::: ::: :::| Mean mapQ: 47.7
> 16.73% |: : :::::: :::::::::::::::::::::::::::|
> 8.37% |: :.::::::: :::::::::::::::::::::::::::| Histo bin width: 3.5Kbp
> 0.00% |:.::::::::::::::::::::::::::::::::::::::| Histo max bin: 83.671%
1 35.1K 70.2K 105.3K 140.4K
BLAST results:
KU900059.1 - Suid alphaherpesvirus 1, Identity: 99.823%, Consensus sequence length: 139172 bp, Reference sequence length: 142228 bp, Consensus sequence coverage: 35%IDENTIFIED - Bovine parvovirus (NC_001540.1, TaxID 10784, 1-level-up TaxID 3052045, 2-levels-up TaxID 1507401, 3-levels-up TaxID 40119) (5.5Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 966728
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 5.5Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 100%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 2.2e+04x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59.2
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 137bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 1.4K 2.7K 4.1K 5.5K
BLAST results:
NC_001540.1 - Bovine parvovirus, Identity: 98.494%, Consensus sequence length: 5509 bp, Reference sequence length: 5517 bp, Consensus sequence coverage: 99%IDENTIFIED - Bovine parvovirus 3 (NC_037053.1, TaxID 172297, 1-level-up TaxID 3052194, 2-levels-up TaxID 40121, 3-levels-up TaxID 40119) (5.1Kbp)
> 90.00% | :::: : : : :::::: :.:: : | Number of reads: 2904
> 80.00% | :::: : :: : ::::::: :::: :: |
> 70.00% |::::: :::: : . ::::::: :::: :: | Covered bases: 3.5Kbp
> 60.00% |:::::. :::: : .: ::::::: :::: :: | Percent covered: 68.41%
> 50.00% |:::::: :::: : :: ::::::: :::: :: | Mean coverage: 70.5x
> 40.00% |:::::: .:::: : :: .::::::: :::::::. : | Mean baseQ: 33.2
> 30.00% |:::::: ::::: : :: ::::::::::::::::: : | Mean mapQ: 59.2
> 20.00% |:::::: ::::: :. :: ::::::::::::::::: : |
> 10.00% |:::::: :::::.:: :: ::::::::::::::::: : | Histo bin width: 127bp
> 0.00% |::::::. :::::::: :: ::::::::::::::::: : | Histo max bin: 100%
1 1.3K 2.5K 3.8K 5.1K
BLAST results:
AF406967.1 - Bovine parvovirus 3, Identity: 98.397%, Consensus sequence length: 4915 bp, Reference sequence length: 5276 bp, Consensus sequence coverage: 63%IDENTIFIED - Hepatitis C virus genotype 1 (NC_004102.1, TaxID 41856, 1-level-up TaxID 3052230, 2-levels-up TaxID 11102, 3-levels-up TaxID 11050) (9.6Kbp)
> 90.00% |.::: : :::: ::: :: :::..::: :: : | Number of reads: 8913
> 80.00% |:::: : :::: ::: :: :::::::: ::. : |
> 70.00% |:::::: :::: :::.:.:: ::::::::::::: : | Covered bases: 8.4Kbp
> 60.00% |::::::: ::::::::::::: ::::::::::::: : | Percent covered: 86.89%
> 50.00% |::::::::::::::::::::::::::::::::::: :: | Mean coverage: 115x
> 40.00% |:::::::::::::::::::::::::::::::::::. :: | Mean baseQ: 33.2
> 30.00% |::::::::::::::::::::::::::::::::::::.:::| Mean mapQ: 58
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 241bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 2.4K 4.8K 7.2K 9.6K
BLAST results:
EU155322.2 - hepatitis C virus genotype 1a, Identity: 93.469%, Consensus sequence length: 9498 bp, Reference sequence length: 9291 bp, Consensus sequence coverage: 87%FILTERED OUT - Sathuperi virus (NC_018462.1, TaxID 159141, 1-level-up TaxID 3052437, 2-levels-up TaxID 11572, 3-levels-up TaxID 1980416) (843bp)
> 90.00% | ::::::::::::::::::::::::::::::::: | Number of reads: 1856
> 80.00% | ::::::::::::::::::::::::::::::::: |
> 70.00% | :::::::::::::::::::::::::::::::::. | Covered bases: 713bp
> 60.00% | :::::::::::::::::::::::::::::::::: | Percent covered: 84.58%
> 50.00% | :::::::::::::::::::::::::::::::::: | Mean coverage: 287x
> 40.00% | :::::::::::::::::::::::::::::::::: | Mean baseQ: 33.3
> 30.00% | :::::::::::::::::::::::::::::::::: | Mean mapQ: 59
> 20.00% | :::::::::::::::::::::::::::::::::: |
> 10.00% | ::::::::::::::::::::::::::::::::::: | Histo bin width: 21bp
> 0.00% | ::::::::::::::::::::::::::::::::::: | Histo max bin: 100%
1 210 420 630 843
BLAST results:
MN270994.1 - Orthobunyavirus sp., Identity: 93.704%, Consensus sequence length: 713 bp, Reference sequence length: 766 bp, Consensus sequence coverage: 96%IDENTIFIED - parainfluenza virus 5 (JQ743324.1, TaxID 2905673, 1-level-up TaxID 3052558, 2-levels-up TaxID 2560195, 3-levels-up TaxID 2560080) (15.3Kbp)
> 90.00% | :::::::::::::. ::::::::::::::::::: ::| Number of reads: 24227
> 80.00% |::::::::::::::: ::::::::::::::::::: ::|
> 70.00% |::::::::::::::: ::::::::::::::::::::::| Covered bases: 14.5Kbp
> 60.00% |:::::::::::::::: .::::::::::::::::::::::| Percent covered: 95.14%
> 50.00% |:::::::::::::::: :::::::::::::::::::::::| Mean coverage: 196x
> 40.00% |:::::::::::::::: :::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% |:::::::::::::::: :::::::::::::::::::::::| Mean mapQ: 59.5
> 20.00% |:::::::::::::::: :::::::::::::::::::::::|
> 10.00% |:::::::::::::::: :::::::::::::::::::::::| Histo bin width: 381bp
> 0.00% |:::::::::::::::: :::::::::::::::::::::::| Histo max bin: 100%
1 3.8K 7.6K 11.4K 15.3K
BLAST results:
OQ994985.1 - parainfluenza virus 5, Identity: 98.73%, Consensus sequence length: 15215 bp, Reference sequence length: 15246 bp, Consensus sequence coverage: 96%IDENTIFIED - GB virus C (NC_001710.1, TaxID 54290, 1-level-up TaxID 3052608, 2-levels-up TaxID 1307799, 3-levels-up TaxID 11050) (9.4Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 275954
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 9.4Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.67%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 3.65e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 34
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 49.3
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 234bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 2.3K 4.7K 7.0K 9.4K
BLAST results:
NC_001710.1 - GB virus C, Identity: 90.777%, Consensus sequence length: 9357 bp, Reference sequence length: 9392 bp, Consensus sequence coverage: 100%FILTERED OUT - Human pegivirus (MW176104.1, TaxID 1758225, 1-level-up TaxID 3052610, 2-levels-up TaxID 1307799, 3-levels-up TaxID 11050) (9.4Kbp)
> 90.00% |: :::::::::::::::::::::::::::::::::::::.| Number of reads: 135183
> 80.00% |:.::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 9.3Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.02%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 1.73e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 36.9
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 36.9
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 234bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 2.3K 4.7K 7.0K 9.4K
BLAST results:
U94695.1 - GB virus C, Identity: 90.68%, Consensus sequence length: 9324 bp, Reference sequence length: 9213 bp, Consensus sequence coverage: 98%IDENTIFIED - Bovine viral diarrhea virus 1 (KC757383.1, TaxID 11099, 1-level-up TaxID 3052619, 2-levels-up TaxID 11095, 3-levels-up TaxID 11050) (12.3Kbp)
> 90.00% |.:::::::::::::::::::::::::::::::::::::: | Number of reads: 134633
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 12.2Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.32%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 1.36e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59.4
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 306bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 3.1K 6.1K 9.2K 12.3K
BLAST results:
KC757383.1 - Bovine viral diarrhea virus 1, Identity: 98.958%, Consensus sequence length: 12186 bp, Reference sequence length: 12267 bp, Consensus sequence coverage: 100%IDENTIFIED - Bovine viral diarrhea virus 2 (AB567658.1, TaxID 54315, 1-level-up TaxID 3052626, 2-levels-up TaxID 11095, 3-levels-up TaxID 11050) (12.3Kbp)
> 80.03% | : | Number of reads: 163
> 71.14% | : |
> 62.25% | : | Covered bases: 683bp
> 53.36% | : | Percent covered: 5.559%
> 44.46% | : | Mean coverage: 0.65x
> 35.57% | : | Mean baseQ: 47.8
> 26.68% | . . : | Mean mapQ: 21.2
> 17.79% |:: : : : |
> 8.89% |:: : : : | Histo bin width: 307bp
> 0.00% |:: :. : .: . | Histo max bin: 88.925%
1 3.1K 6.1K 9.2K 12.3K
BLAST results:
AB567658.1 - Bovine viral diarrhea virus 2, Identity: 91.216%, Consensus sequence length: 8336 bp, Reference sequence length: 12286 bp, Consensus sequence coverage: 3%IDENTIFIED - Porcine parvovirus (ON924738.1, TaxID 10796, 1-level-up TaxID 3052720, 2-levels-up TaxID 1506574, 3-levels-up TaxID 40119) (5.1Kbp)
> 90.00% |::::::::::::::::::::::::::::::::::::::::| Number of reads: 23050
> 80.00% |::::::::::::::::::::::::::::::::::::::::|
> 70.00% |::::::::::::::::::::::::::::::::::::::::| Covered bases: 5.1Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 99.86%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 577x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 33.1
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 59.1
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 126bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 1.3K 2.5K 3.8K 5.1K
BLAST results:
ON924738.1 - Porcine parvovirus, Identity: 98.506%, Consensus sequence length: 4980 bp, Reference sequence length: 5078 bp, Consensus sequence coverage: 98%IDENTIFIED - Human papillomavirus 23 (U31781.1, TaxID 37955, 1-level-up TaxID 333924, 2-levels-up TaxID 333922, 3-levels-up TaxID 2169595) (7.3Kbp)
> 83.61% | : | Number of reads: 22
> 74.32% | : |
> 65.03% | : | Covered bases: 283bp
> 55.74% | : | Percent covered: 3.864%
> 46.45% | : | Mean coverage: 0.401x
> 37.16% | : | Mean baseQ: 32.5
> 27.87% | :: | Mean mapQ: 57.3
> 18.58% |::: |
> 9.29% |::: | Histo bin width: 183bp
> 0.00% |::: | Histo max bin: 92.896%
1 1.8K 3.7K 5.5K 7.3K
BLAST results:
KY652675.1 - Human papillomavirus 23, Identity: 95.27%, Consensus sequence length: 296 bp, Reference sequence length: 7317 bp, Consensus sequence coverage: 100%IDENTIFIED - Human papillomavirus 4 (NC_001457.1, TaxID 10617, 1-level-up TaxID 333926, 2-levels-up TaxID 325455, 3-levels-up TaxID 2169595) (7.4Kbp)
> 90.00% | : | Number of reads: 78
> 80.00% | : |
> 70.00% | : | Covered bases: 234bp
> 60.00% | : | Percent covered: 3.182%
> 50.00% | : | Mean coverage: 1.6x
> 40.00% | : | Mean baseQ: 33.6
> 30.00% | : | Mean mapQ: 60
> 20.00% | : |
> 10.00% | :: | Histo bin width: 183bp
> 0.00% | .:: | Histo max bin: 100%
1 1.8K 3.7K 5.5K 7.4K
BLAST results:
NC_001457.1 - Human papillomavirus 4, Identity: 100.0%, Consensus sequence length: 234 bp, Reference sequence length: 7353 bp, Consensus sequence coverage: 100%IDENTIFIED - Porcine endogenous retrovirus A (HQ540592.1, TaxID 194958, 1-level-up TaxID 61673, 2-levels-up TaxID 369960, 3-levels-up TaxID 153135) (15.3Kbp)
> 69.79% | : | Number of reads: 1305
> 62.04% | : |
> 54.28% | : | Covered bases: 1.6Kbp
> 46.53% | : : : | Percent covered: 10.38%
> 38.77% | : : . . : | Mean coverage: 8.63x
> 31.02% | : : : : : | Mean baseQ: 33.2
> 23.26% | : : : : : | Mean mapQ: 56.1
> 15.51% | : . : : :: : :. |
> 7.75% | : : : :: :: : :::. .| Histo bin width: 383bp
> 0.00% | : : : :: :: : :::: :| Histo max bin: 77.546%
1 3.8K 7.7K 11.5K 15.3K
BLAST results:
HQ540592.1 - Porcine endogenous retrovirus A, Identity: 89.439%, Consensus sequence length: 12739 bp, Reference sequence length: 15325 bp, Consensus sequence coverage: 10%IDENTIFIED - Chikungunya virus (MK286896.1, TaxID 37124, 1-level-up TaxID 11019, 2-levels-up TaxID 11018, 3-levels-up TaxID 2732544) (16.0Kbp)
> 90.00% |::::::::::::::::::::::::::::: ::::::::: | Number of reads: 408150
> 80.00% |::::::::::::::::::::::::::::: ::::::::: |
> 70.00% |::::::::::::::::::::::::::::: :::::::::.| Covered bases: 15.7Kbp
> 60.00% |::::::::::::::::::::::::::::::::::::::::| Percent covered: 98.44%
> 50.00% |::::::::::::::::::::::::::::::::::::::::| Mean coverage: 3.11e+03x
> 40.00% |::::::::::::::::::::::::::::::::::::::::| Mean baseQ: 34.3
> 30.00% |::::::::::::::::::::::::::::::::::::::::| Mean mapQ: 38.6
> 20.00% |::::::::::::::::::::::::::::::::::::::::|
> 10.00% |::::::::::::::::::::::::::::::::::::::::| Histo bin width: 399bp
> 0.00% |::::::::::::::::::::::::::::::::::::::::| Histo max bin: 100%
1 4.0K 8.0K 12.0K 16.0K
BLAST results:
AM258993.1 - Chikungunya virus, Identity: 99.714%, Consensus sequence length: 15775 bp, Reference sequence length: 11598 bp, Consensus sequence coverage: 99%IDENTIFIED - Torque teno midi virus (MN777838.1, TaxID 432261, 1-level-up TaxID 363628, 2-levels-up TaxID 687329, 3-levels-up TaxID 10239) (2.7Kbp)
> 90.00% | :: | Number of reads: 133
> 80.00% | :: |
> 70.00% | ::: | Covered bases: 268bp
> 60.00% | ::: | Percent covered: 9.933%
> 50.00% | ::: | Mean coverage: 1.78x
> 40.00% | :::: : | Mean baseQ: 35
> 30.00% | :::: : | Mean mapQ: 21.3
> 20.00% | :::: : |
> 10.00% | :::: :: | Histo bin width: 67bp
> 0.00% | :::: :: | Histo max bin: 100%
1 670 1.3K 2.0K 2.7K
BLAST results:
MN777888.1 - Torque teno midi virus, Identity: 97.26%, Consensus sequence length: 784 bp, Reference sequence length: 2614 bp, Consensus sequence coverage: 28%FILTERED OUT - Human endogenous retrovirus HERV-K(I) (AB047209.1, TaxID 135106, 1-level-up TaxID 45617, 2-levels-up TaxID 206037, 3-levels-up TaxID 35276) (11.1Kbp)
> 34.32% | : | Number of reads: 24
> 30.50% | . : |
> 26.69% | : : | Covered bases: 306bp
> 22.88% | : .: | Percent covered: 2.747%
> 19.06% | : :: | Mean coverage: 0.162x
> 15.25% | : :: | Mean baseQ: 33.5
> 11.44% | : :: | Mean mapQ: 35.1
> 7.63% | : :: |
> 3.81% | : : :: : | Histo bin width: 278bp
> 0.00% | : : :: : | Histo max bin: 38.129%
1 2.8K 5.6K 8.3K 11.1K
BLAST results:
BK009405.1 - Macaca mulatta, Identity: 95.429%, Consensus sequence length: 9899 bp, Reference sequence length: 9589 bp, Consensus sequence coverage: 2%IDENTIFIED - Torque teno virus (MN765737.1, TaxID 68887, 1-level-up TaxID 363628, 2-levels-up TaxID 687329, 3-levels-up TaxID 10239) (3.1Kbp)
> 90.00% | .:::::: :: : ::: | Number of reads: 184
> 80.00% | :::::::. :: : ::: :. |
> 70.00% | :::::::: ::: : ::: :: | Covered bases: 1.4Kbp
> 60.00% | :::::::: ::: : ::: :: | Percent covered: 45.53%
> 50.00% | :::::::: ::: :: ::: :: | Mean coverage: 8.06x
> 40.00% | :::::::: ::: :: :::: :: | Mean baseQ: 34.4
> 30.00% | :::::::: :::.:: :::: :: | Mean mapQ: 51.3
> 20.00% | :::::::: :::::: ::::: :: |
> 10.00% | :::::::: .:::::: ::::: :: | Histo bin width: 77bp
> 0.00% | :::::::: ::::::: ::::: :: | Histo max bin: 100%
1 770 1.5K 2.3K 3.1K
BLAST results:
MN766595.1 - Torque teno virus, Identity: 90.185%, Consensus sequence length: 2699 bp, Reference sequence length: 3581 bp, Consensus sequence coverage: 50%IDENTIFIED - Bovine coronavirus (ON792945.1, TaxID 11128, 1-level-up TaxID 694003, 2-levels-up TaxID 2509481, 3-levels-up TaxID 694002) (31.2Kbp)
> 17.54% | : | Number of reads: 78
> 15.59% | : |
> 13.64% | : | Covered bases: 152bp
> 11.69% | : | Percent covered: 0.4869%
> 9.74% | : | Mean coverage: 0.358x
> 7.79% | : | Mean baseQ: 32.8
> 5.85% | : | Mean mapQ: 59.2
> 3.90% | : |
> 1.95% | : | Histo bin width: 780bp
> 0.00% | : | Histo max bin: 19.487%
1 7.8K 15.6K 23.4K 31.2K
BLAST results:
KF530093.1 - Human coronavirus OC43, Identity: 100.0%, Consensus sequence length: 152 bp, Reference sequence length: 30483 bp, Consensus sequence coverage: 99%FILTERED OUT - Porcine circovirus type 1/2a (NC_013774.1, TaxID 720569, 1-level-up TaxID 345249, 2-levels-up TaxID 39725, 3-levels-up TaxID 39724) (1.8Kbp)
> 90.00% | ::: ::: | Number of reads: 462
> 80.00% | ::: ::: |
> 70.00% | .::: ::: | Covered bases: 352bp
> 60.00% | :::: ::: | Percent covered: 19.92%
> 50.00% | :::: ::: | Mean coverage: 23x
> 40.00% | :::: ::: | Mean baseQ: 35.5
> 30.00% | ::::::::: | Mean mapQ: 9.41
> 20.00% | ::::::::: : |
> 10.00% | ::::::::: .: | Histo bin width: 44bp
> 0.00% | ::::::::: :: | Histo max bin: 100%
1 440 880 1.3K 1.8K
BLAST results:
Y09921.1 - Porcine circovirus 1, Identity: 100.0%, Consensus sequence length: 1103 bp, Reference sequence length: 1759 bp, Consensus sequence coverage: 30%FILTERED OUT - TTV-like mini virus (MN774633.1, TaxID 93678, 1-level-up TaxID 1535289, 2-levels-up TaxID 687332, 3-levels-up TaxID 687329) (2.6Kbp)
> 90.00% | :: | Number of reads: 184
> 80.00% | :: |
> 70.00% | ::: | Covered bases: 187bp
> 60.00% | ::: | Percent covered: 7.113%
> 50.00% | ::: | Mean coverage: 10.3x
> 40.00% | ::: | Mean baseQ: 33
> 30.00% | ::: | Mean mapQ: 59.6
> 20.00% | ::: |
> 10.00% | ::: | Histo bin width: 65bp
> 0.00% | :::: | Histo max bin: 100%
1 650 1.3K 1.9K 2.6K
BLAST results:
MZ286244.1 - Anelloviridae sp., Identity: 98.93%, Consensus sequence length: 187 bp, Reference sequence length: 2879 bp, Consensus sequence coverage: 100%